Human accelerated regions (HARs) and Cajal–Retzius cells

8:17 PM | BY ZeroDivide EDIT
Human accelerated regions (HARs), first described in August 2006,[1][2] are a set of 49 segments of the human genome that are conserved throughout vertebrate evolution but are strikingly different in humans. They are named according to their degree of difference between humans and chimpanzees (HAR1 showing the largest degree of human-chimpanzee differences). Found by scanning through genomic databases of multiple species, some of these highly mutated areas may contribute to human-specific traits. Others may represent loss of function mutations, possibly due to the action of biased gene conversion [2][3] rather than adaptive evolution.

Characterisation of HAR1-HAR5 regions, from Pollard et al., 2006.[2]
Several of the HARs encompass genes known to produce proteins important in neurodevelopment. HAR1 is an 106-base pair stretch found on the long arm of chromosome 20 overlapping with part of the RNA genes HAR1F and HAR1R. HAR1F is active in the developing human brain. The HAR1 sequence is found (and conserved) in chickens and chimpanzees but is not present in fish or frogs that have been studied. There are 18 base pair mutations different between humans and chimpanzees, far more than expected by its history of conservation.[1]
HAR2 includes HACNS1 a gene enhancer "that may have contributed to the evolution of the uniquely opposable human thumb, and possibly also modifications in the ankle or foot that allow humans to walk on two legs". Evidence to date shows that of the 110,000 gene enhancer sequences identified in the human genome, HACNS1 has undergone the most change during the evolution of humans following the split with the ancestors of chimpanzees.[4] The substitutions in HAR2 may have resulted in loss of binding sites for a repressor, possibly due to biased gene conversion [5] .[6]

n molecular biology, Human accelerated region 1 (highly accelerated region 1, HAR1) is a segment of the human genome found on the long arm of chromosome 20. It is a Human accelerated region. It is located within a pair of overlapping long non-coding RNA genes, HAR1A (HAR1F) and HAR1B (HAR1R).[1]

Place cell, Head direction cell, Grid cell, Border cells

9:53 AM | BY ZeroDivide EDIT
Spatial firing patterns of 8 place cells recorded from the CA1 layer of a rat. The rat ran back and forth along an elevated track, stopping at each end to eat a small food reward. Dots indicate positions where action potentials were recorded, with color indicating which neuron emitted that action potential.
place cell is a type of pyramidal neuron within the hippocampus that becomes active when the animal enters a particular place in the environment; this place is known as the place field. A given place cell will have only one, or a few, place fields in a typical small laboratory environment, but more in a larger region.[1] There is no apparent topography to the pattern of place fields, unlike other brain areas such as visual cortex - neighboring place cells are as likely to have distant fields as neighboring ones.[2] In a different environment, typically about half the place cells will still have place fields, but these will be in new places unrelated to their former locations.[3]
The place cells are thought, collectively, to act as a cognitive representation of a specific location in space, known as a cognitive map.[4] Place cells work with other types of neurons in the hippocampus and surrounding regions to perform this kind of spatial processing.[5] but the ways in which they function within the hippocampus are still being researched.[6]
Studies with rats have shown that place cells tend to fire quickly when a rat enters a new, open environment, however outside of a firing field, place cells tend to be relatively inactive.[7] Together place cells are thought to form a "cognitive map" in which they have localized firing patterns called place fields.[8]Place cell firing patterns are often determined by external sensory information and the local environment. Place cells have proven to have the ability to suddenly change their firing pattern from one pattern to another, a phenomenon known as “re-mapping” and though place cells do change according to the external environment, they are stabilized by attractor dynamics which “enable the system to resist small changes in sensory input but respond collectively and coherently to large ones."[8]
Although place cells are part of a non-sensory cortical system, their firing behavior is strongly correlated to sensory input. Place cells fire when an animal is located in parts of the environment known as place fields.[9] These circuits may have important implications for memory, as they provide the spatial context for memories and past experiences.[9] Like many other parts of the brain, place cell circuits are dynamic. They are constantly adjusting and remapping to suit the current location and experience of the brain. Place cells do not work alone to create visuospatial representation; they are a part of a complex circuit that informs place awareness and place memory.[9]
The 2014 Nobel Prize in Physiology or Medicine was awarded in part to John O'Keefe for the discovery of place cells.[10]

Background[edit]

These cells were first discovered in the brain, and specifically in the hippocampus, by O’Keefe and Dostrovsky (1971).[11] Though the hippocampus plays a role in learning and memory, the existence of place cells within the hippocampus demonstrates the role it plays with spatial adaptation and awareness. There have been recorded increases in firing patterns of rats in open environments and recorded spatial learning and awareness impairments after damage to the hippocampus and the place cells within.[11] Studies with rats have shown that place cells are very responsive to spatial surroundings. For example a study by John O'Keefe and Lynn Nadel found that space cells would fire more rapidly when rats ran past places in the environment. when a new item was added to the environment, or when an item that is usually there is not present.[12]
After O'Keefe and Dostrovsky first found the existence of place cells within the hippocampus in 1971, they conduced a study five years later with rats that demonstrated these place cells would fire whenever the rat was within a certain place in the environment.[13] This was one of the first indicators that place cells were related to spatial orientation. They also discovered that space cells fired in different areas of the hippocampus depending on where the rat went, and this whole firing network made up the rat’s environment (O’Keefe 1976, Wilson & McNaughton 1993). As environments changed, the same place cells would fire, but the relationship and dynamic between firing fields would change (O’Keefe & Conway 1978). Therefore place cells are thought to give humans and animals a guide to the environment it is navigating and its position in that environment. Place cells are generally observed through recorded action potentials. As humans or animals navigate large environments and then arrive at a particular location, there is a notable increase in the place cell firing rate once that specific location has been reached (Eichenbaum, Dudchencko Wood, Shaprio and Tanila, 1999). For more information on studies with rats, "Place Cells and Aging".
There has been much debate as to whether hippocampal place cells function based upon landmarks in the environment or on environmental boundaries or an interaction between the two.[14] There has also been much study as to whether hippocampal pyramidal cells (mostly in rats) signal non-spatial information as well as spatial information. According to the cognitive map theory, the hippocampus's primary role in the rat is to store spatial information through place cells and the rat hippocampus was biologically designed to provide the rat with spatial information.[15]
However, there have been investigations as to whether the hippocampus may store other non-spatial information as well.[15] These other explanations in favor of non-spatial components of the hippocampus argue that the hippocampus has "flexible" functions in that it can apply memory in circumstances different from those under which these relationships were learned. There are also views that claim that the hippocampus has functions altogether removed from time and space.[15] However, other explanations of data that prematurely support the existence of non-spatial functions in the hippocampus must be considered. Evidence against this flexibility theory comes in the form of using the delayed non-match-to sample task. This task uses flexibility in that the rat is first presented with a visual representation such as a block. After a delay, when presented with the block and a novel object, the rat must choose the novel object in order to obtain a reward. Its completion of this task requires flexibility. However, during this task, hippocampal activity does not sufficiently increase and lesioning (induced trauma) in the hippocampus does not change the rat's performance on this task.[15]
Place cells fire in different, often widespread, hippocampal locations at the same time, which some interpret as their having different functions in different locations. A rat's representation of its environment is constructed by the firing of groups of place cells that are widely distributed in the hippocampus, however, this does not necessarily mean that each location serves a different purpose. When recording the firing fields of certain hippocampal cells in an open field environment, firing fields prove to be similar even when the rat travels in different directions, exhibiting omnidirectionality. However, when limitations are placed in the aforementioned environment, fields prove to be directional and fire in one direction but not in another.
The same directionality occurs when rats participate in the radial arm maze. The radial arm maze consists of a central circle from which several arm-like projections radiate. These projections either contain food or do not. Some consider the firing or lack of firing of place cells depending on the arm to be a function of goal-oriented behavior. However, when moving from one arm to another when they both contain food, place cells only fire in one direction, meaning that one cannot attribute firing purely to a goal-approach. A directionality component must be added: for example, a North goal as opposed to a South goal.[15]
When visual cues in an environment such as visibility of a line where the wall meets the floor, height of the wall, and width of the wall are available to the rat to discern distance and location of the wall, the rat internalizes this external information to register its surroundings. However, when these visual cues are unavailable, the rat registers wall location by colliding with the wall and then place cell firing rate after the collision provides information to the rat about its distance from the wall based on the direction and speed of its movements after the collision. In this situation, the firing of place cells is due to motor inputs.[15]
There are both simple place cells with purely locational correlates and also complex place cells that increase their firing rate when the rat encounters a particular object or experience. Others fire when a rat's expectations in a particular location are not met or when they encounter novelty along their path: the cells that fire in these situations are known as misplace cells.
The place cells that appear to operate based solely on non-spatial memory seem to have spatial components. Many lesioning experiments attempting to inflict non-spatial memory deficits in the hippocampus have been unsuccessful. In some cases, lesioning has been successful in inflicting non-spatial memory deficits, however, other structures besides the hippocampus were affected by lesioning. Therefore, the rat’s non-spatial memory deficits could have been unrelated to place cells.[15] Thus, based on information from studies thus far, the cognitive map theory seems to be most supported and non-spatial theories may fail to take spatial components into account.[15]
Place cells are located in the hippocampus, a brain structure located in the medial temporal lobe of the brain.

Function[edit]

Place fields[edit]

Place cells fire in a specific region known as a place field. Place fields are roughly analogous to the receptive fields of sensory neurons, in that the firing region corresponds to a region of sensory information in the environment. A good depiction of place fields can be seen here[16] This animation shows place fields firing in succession as a rat moves along a linear track. Place fields are thus considered to be allocentric rather than egocentric, meaning that they are defined with respect to the outside world rather than the body. By orienting based on the environment rather than the individual, place fields can work effectively as neural maps of the environment.[17]

Sensory input[edit]

Place cells were initially believed to fire in direct relation to simple sensory inputs, but recent studies suggest that this may not be the case.[17] Place fields are usually unaffected by large sensory changes, like removing a landmark from an environment, but respond to subtle changes, like a change in color or shape of an object.[18]This suggests that place cells respond to complex stimuli rather than simple individual sensory cues. According to a model known as the functional differentiationmodel, sensory information is processed in various cortical structures upstream of the hippocampus before actually reaching the structure, so that the information received by place cells is a compilation of different stimuli.[17]

Spindle neurons, also called von Economo neurons

9:52 AM | BY ZeroDivide EDIT
Neuron: Spindle neuron
Spindle-cell.png
Cartoon of a spindle cell (right) compared to a normal pyramidal cell (left).
LocationAnterior cingulate cortex andFronto-insular cortex
FunctionGlobal firing rate regulation and regulation of emotional state
MorphologyUnique spindle-shaped projection neuron
Presynaptic connectionsLocal input to ACC and FI
Postsynaptic connectionsFrontal and temporal cortex.
Micrograph showing a spindle neuron of the cingulateHE-LFB stain.
Spindle neurons, also called von Economo neurons (VENs), are a specific class of neurons that are characterized by a large spindle-shapedsoma, gradually tapering into a single apical axon in one direction, with only a single dendrite facing opposite. Whereas other types of cells tend to have many dendrites, the polar shaped morphology of spindle neurons is unique. They are found in two very restricted regions in the brains ofhominids – the family of species comprising humans and other great apes – the anterior cingulate cortex (ACC) and the fronto-insular cortex (FI). Recently they have been discovered in the dorsolateral prefrontal cortex of humans.[1] Spindle cells are also found in the brains of the humpback whalesfin whaleskiller whalessperm whales,[2][3] bottlenose dolphinRisso’s dolphinbeluga whales,[4] and the African and Asian elephants.[5]The name von Economo neuron comes from their discoverer, Constantin von Economo (1876–1931) who described them in 1929.[6]

Function of spindle neurons[edit]

Spindle neurons are relatively large cells that may allow rapid communication across the relatively large brains of great apeselephants, andcetaceans. Although rare in comparison to other neurons, spindle neurons are abundant, and large, in humans. However, the concentration of spindle cells has been measured to be three times higher in Cetaceans in comparison to humans.[3][7] They have only been found thus far in theanterior cingulate cortex (ACC), fronto-insular cortex (FI), and the dorsolateral prefrontal cortex.

Evolutionary significance[edit]

The observation that spindle neurons only occur in a highly significant group of animals (from a human point of view) has led to speculation that they are of great importance in human evolution and/or brain function. Their restriction (among the primates) to great apes leads to the hypothesis that they developed no earlier than 15-20 million years ago, prior to the divergence of orangutans from the African great apes. The discovery of spindle neurons in diverse whale species[3][4] has led to the suggestion that they are "a possible obligatory neuronal adaptation in very large brains, permitting fast information processing and transfer along highly specific projections and that evolved in relation to emerging social behaviors."[4]p. 254 Their presence in the brains of these species supports this theory, pointing towards the existence of these specialized neurons only in highly intelligent mammals, and may be an example of convergent evolution.[8] Recently, primitive forms of spindle neurons have also been discovered in macaque monkey brains.[9]